PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00006.1.g04150.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family S1Fa-like
Protein Properties Length: 76aa    MW: 8391.11 Da    PI: 10.7353
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00006.1.g04150.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA131.62e-41776270
                            S1FA  2 avakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                                    +v+++e+ kGlnPG+ivllvv++++l+f+vgny+lyvyaqk+lPP+kkkPvskkklkrek kqGv++PGe
  Zjn_sc00006.1.g04150.1.sm.mkhc  7 NVVIEEVnKGLNPGMIVLLVVASFMLLFFVGNYALYVYAQKTLPPKKKKPVSKKKLKREKQKQGVSAPGE 76
                                    67888888*************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190131.0E-15876No hitNo description
PfamPF046892.1E-381276IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MGTLANNVVI EEVNKGLNPG MIVLLVVASF MLLFFVGNYA LYVYAQKTLP PKKKKPVSKK  60
KLKREKQKQG VSAPGE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633609.15e-27PREDICTED: DNA-binding protein S1FA2
SwissprotQ7XLX66e-29S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLA0A0D3FVJ53e-27A0A0D3FVJ5_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZKE52e-27A0A0D9ZKE5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0H0D22e-27A0A0E0H0D2_ORYNI; Uncharacterized protein
TrEMBLA0A0E0P8S32e-27A0A0E0P8S3_ORYRU; Uncharacterized protein
STRINGLOC_Os04g33440.22e-26(Oryza sativa Japonica Group)
STRINGBGIOSGA015143-PA2e-26(Oryza sativa Indica Group)
STRINGORGLA04G0086600.12e-26(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51543563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37120.14e-10S1FA-like DNA-binding protein